PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497409.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 298aa    MW: 31744 Da    PI: 9.7625
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-09102127227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ f     Ck+Gd+C+FaHg+
  XP_004497409.1 102 KTRLCNKFNTAEGCKFGDKCHFAHGE 127
                     8***********************96 PP

2zf-CCCH32.81.2e-10265289126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC +f + G C +G++C+FaHg
  XP_004497409.1 265 FKTKLCENFTK-GSCTFGEKCHFAHG 289
                     69*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.6763361IPR000571Zinc finger, CCCH-type
SMARTSM003562.43360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-53460IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-73558IPR000571Zinc finger, CCCH-type
PfamPF146081.84158No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-1498131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-898131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206101128IPR000571Zinc finger, CCCH-type
SMARTSM003560.0074102127IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6102127IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.4E-15161244IPR004088K Homology domain, type 1
SMARTSM003223.0E-11171241IPR004087K Homology domain
PROSITE profilePS5008414.068172236IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.5E-15172242IPR004088K Homology domain, type 1
PfamPF000133.8E-11174237IPR004088K Homology domain, type 1
CDDcd001051.99E-13174237No hitNo description
Gene3DG3DSA:4.10.1000.103.0E-16261296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-9264294IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-7264290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.755264291IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-8265289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDRKRGRPEG SFNGNGGAKR GRIETESFQS GLGSKLKPCT KFFSTSGCPF GEGCHFLHYV  60
PGGFKAVSQM INVGSNPAIP PIGRNPNVPP SFPDGSSPPV VKTRLCNKFN TAEGCKFGDK  120
CHFAHGEWEL GRPTVPAYED TRAMGQMQSS RVGGRIEPSH PPHGPAVSFG ASATAKISIN  180
ASLVGAIIGK NGVNSKQICR ITGVKLSIRE HDSDPNLKNI ELEGSFDQIK QASAMVHDLI  240
LNVSSVSGPP GKKISSHSSA PANNFKTKLC ENFTKGSCTF GEKCHFAHGI DELRKPGI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497409.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
SwissprotQ7F8R01e-117C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLC6TA411e-177C6TA41_SOYBN; Uncharacterized protein
STRINGGLYMA20G39160.11e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-56C3H family protein